Towards Universal Cell Embeddings: Integrating Single-cell RNA-seq Datasets across Species with SATURN
Yanay Rosen*, Maria Brbic*, Yusuf Roohani*, Kyle Swanson, Ziang, Li, Jure Leskovec
Nature Methods 2024
The Pursuit of Human Labeling: A New Perspective on Unsupervised Learning
Artyom Gadetsky, Maria Brbic
NeurIPS (spotlight) 2023
Aging Fly Cell Atlas Identifies Exhaustive Aging Features at Cellular Resolution
Tzu-Chiao Lu*, Maria Brbic*, Ye-Jin Park, Tyler Jackson, Jiaye Chen, Sai Saroja Kolluru, Yanyan Qi, Nadja Sandra Katheder, Xiaoyu Tracy Cai, Seungjae Lee, YenChung Chen, Niccole Auld, Doug Welsch, Samuel D’Souza , Angela Oliveira Pisco , Robert C. Jones , Jure Leskovec, Eric C. Lai, Hugo J. Bellen, Liqun Luo, Heinrich Jasper, Stephen R. Quake, Hongjie Li
Science 2023
Organization of the human intestine at single-cell resolution
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Nature 2023
Annotation of Spatially Resolved Single-cell Data with STELLAR
Maria Brbic*, Kaidi Cao*, John W. Hickey*, Yuqi Tan, Michael Snyder, Garry P. Nolan, Jure Leskovec
Nature Methods 2022
Open-World Semi-Supervised Learning
Kaidi Cao*, Maria Brbic*, Jure Leskovec
ICLR 2022
Fly Cell Atlas: A Single-Cell Transcriptomic Atlas of the Adult Fruit Fly
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Vincent Gardeux, Wouter Saelens, Fabrice David, Maria Brbic, Katina Spanier, Jure Leskovec, Colleen N. McLaughlin, Qijing Xie, Robert C. Jones et al.
Science 2022
Chemoreceptor Co-Expression in Drosophila Olfactory Neurons
Darya Task, Chun-Chieh Lin, Alina Vulpe, Ali Afify, Sydney Ballou, Maria Brbic, Philipp Schlegel, Gregory S. X. E. Jefferis, Hongjie Li, Karen Menuz, Christopher J. Potter
eLife 2022
Concept Learners for Few-Shot Learning
Kaidi Cao*, Maria Brbic*, Jure Leskovec
ICLR 2021
Leveraging the Cell Ontology to Classify Unseen Cell Types
Sheng Wang, Angela Oliveira Pisco, Aaron McGeever, Maria Brbic, Marinka Zitnik, Spyros Darmanis, Jure Leskovec, Jim Karkanias, Russ B. Altman
Nature Communications 2021
Single-Cell Transcriptomes of Developing and Adult Olfactory Receptor Neurons in Drosophila
Colleen N. McLaughlin*, Maria Brbic*, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M. Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert Jones, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
eLife 2021
Temporal evolution of Single-Cell Transcriptomes of Drosophila Olfactory Projection Neurons
Qijing Xie, Maria Brbic, Felix Horns, Sai Saroja Kolluru, Robert Jones, Jiefu Li, R. Reddy, Anay Xie, Sayeh Kohani, Zhuoran Li, Colleeen N. McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J. Luginbuhl, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
eLife 2021
MARS: Discovering Novel Cell Types across Heterogeneous Single-Cell Experiments
Maria Brbic, Marinka Zitnik, Sheng Wang, Angela O. Pisco, Russ B. Altman, Spyros Darmanis, Jure Leskovec
Nature Methods 2020
Selective Sampling-Based Scalable Sparse Subspace Clustering
Shin Matsushima, Maria Brbic
NeurIPS 2019
A Synthesis of Bacterial and Archaeal Phenotypic Trait Data
Joshua S. Madin, Daniel A. Nielsen, Maria Brbic, Ross Corkrey et al.
Scientific Data 2020
Model-Agnostic Graph Regularization for Few-Shot Learning
Ethan Z. Shen, Maria Brbic, Nicolas Monath, Jiaqi Zhai, Manzil Zaheer, Jure Leskovec
NeurIPS Workshop on Meta-Learning 2020
ℓ₀-Motivated Low-Rank Sparse Subspace Clustering
Maria Brbic, Ivica Kopriva
IEEE Transactions on Cybernetics 2018
Multi-View Low-Rank Sparse Subspace Clustering
Maria Brbic, Ivica Kopriva
Pattern Recognition 2018
Phenotype Inference from Text and Genomic Data
Maria Brbic, Matija Piskorec, Vedrana Vidulin, Anita Kriško, Tomislav Šmuc, Fran Supek
Joint European Conference on Machine Learning and Knowledge Discovery in Databases (ECML-PKDD) 2017
The Landscape of Microbial Phenotypic Traits and Associated Genes
Maria Brbic, Matija Piskorec, Vedrana Vidulin, Anita Krisko, Tomislav Smuc, Fran Supek
Nucleic Acids Research 2016
Global Shifts in Genome and Proteome Composition Are Very Tightly Coupled
Maria Brbic, Tobias Warnecke, Anita Krisko, Fran Supek
Genome Biology and Evolution 2015